IL_8ZGY_017

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAAUC*GGAAUAC

Length

16 nucleotides

Bulged bases

8ZGY|1|LA|A|518, 8ZGY|1|LA|U|519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_017 not in the Motif Atlas

Homologous match to IL_8P9A_247

Geometric discrepancy: 0.1048

The information below is about IL_8P9A_247

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58126.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|G|516
8ZGY|1|LA|G|517
8ZGY|1|LA|A|518
8ZGY|1|LA|U|519
8ZGY|1|LA|A|520
8ZGY|1|LA|A|521
8ZGY|1|LA|A|522
8ZGY|1|LA|U|523
8ZGY|1|LA|C|524
*
8ZGY|1|LA|G|566
8ZGY|1|LA|G|567
8ZGY|1|LA|A|568
8ZGY|1|LA|A|569
8ZGY|1|LA|U|570
8ZGY|1|LA|A|571
8ZGY|1|LA|C|572

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LI

Large ribosomal subunit protein uL30A

Chain LO

Large ribosomal subunit protein eL14A

Chain LU

Large ribosomal subunit protein eL20A