IL_8ZGY_020
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_020 not in the Motif Atlas
- Homologous match to IL_8CRE_024
- Geometric discrepancy: 0.1177
- The information below is about IL_8CRE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74367.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZGY|1|LA|G|679
8ZGY|1|LA|U|680
8ZGY|1|LA|U|681
8ZGY|1|LA|U|682
8ZGY|1|LA|G|683
*
8ZGY|1|LA|C|695
8ZGY|1|LA|A|696
8ZGY|1|LA|U|697
8ZGY|1|LA|A|698
8ZGY|1|LA|C|699
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
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