IL_8ZGY_021

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_021 not in the Motif Atlas

Homologous match to IL_8P9A_251

Geometric discrepancy: 0.0745

The information below is about IL_8P9A_251

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8ZGY|1|LA|G|724
8ZGY|1|LA|G|725
8ZGY|1|LA|G|726
8ZGY|1|LA|G|727
*
8ZGY|1|LA|U|740
8ZGY|1|LA|G|741
8ZGY|1|LA|C|742
8ZGY|1|LA|A|743
8ZGY|1|LA|C|744

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LS

Large ribosomal subunit protein eL18A

Chain Ld

Large ribosomal subunit protein eL29