IL_8ZGY_031

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|G|907, 8ZGY|1|LA|A|919, 8ZGY|1|LA|A|920, 8ZGY|1|LA|U|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_031 not in the Motif Atlas

Homologous match to IL_8CRE_036

Geometric discrepancy: 0.0499

The information below is about IL_8CRE_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|G|906
8ZGY|1|LA|G|907
8ZGY|1|LA|G|908
*
8ZGY|1|LA|U|918
8ZGY|1|LA|A|919
8ZGY|1|LA|A|920
8ZGY|1|LA|U|921
8ZGY|1|LA|C|922

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LP

Large ribosomal subunit protein eL15A

Chain LR

Large ribosomal subunit protein uL22A

Chain Ll

Large ribosomal subunit protein eL37A