IL_8ZGY_035

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|G|983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_035 not in the Motif Atlas

Homologous match to IL_8CRE_040

Geometric discrepancy: 0.0608

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8ZGY|1|LA|A|982
8ZGY|1|LA|G|983
8ZGY|1|LA|U|984
*
8ZGY|1|LA|A|1098
8ZGY|1|LA|U|1099

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LI

Large ribosomal subunit protein uL30A

Chain LS

Large ribosomal subunit protein eL18A

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29