IL_8ZGY_040

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|C|1015, 8ZGY|1|LA|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|G|1012
8ZGY|1|LA|U|1013
8ZGY|1|LA|U|1014
8ZGY|1|LA|C|1015
8ZGY|1|LA|C|1016
8ZGY|1|LA|G|1017
*
8ZGY|1|LA|U|1033
8ZGY|1|LA|G|1034
8ZGY|1|LA|A|1035
8ZGY|1|LA|C|1036

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain LM

Large ribosomal subunit protein uL5B