IL_8ZGY_045
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8ZGY|1|LA|U|1330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_045 not in the Motif Atlas
- Homologous match to IL_8CRE_051
- Geometric discrepancy: 0.0606
- The information below is about IL_8CRE_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8ZGY|1|LA|U|1166
8ZGY|1|LA|U|1167
8ZGY|1|LA|A|1168
8ZGY|1|LA|A|1169
8ZGY|1|LA|G|1170
*
8ZGY|1|LA|C|1327
8ZGY|1|LA|U|1328
8ZGY|1|LA|A|1329
8ZGY|1|LA|U|1330
8ZGY|1|LA|A|1331
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain Lg
- Large ribosomal subunit protein eL32
- Chain Lh
- Large ribosomal subunit protein eL33A
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