IL_8ZGY_047

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|U|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_047 not in the Motif Atlas

Homologous match to IL_8P9A_278

Geometric discrepancy: 0.121

The information below is about IL_8P9A_278

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|LA|A|1179
8ZGY|1|LA|U|1180
8ZGY|1|LA|A|1181
*
8ZGY|1|LA|U|1323
8ZGY|1|LA|U|1324

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LI

Large ribosomal subunit protein uL30A

Chain LQ

Large ribosomal subunit protein uL13A

Chain LU

Large ribosomal subunit protein eL20A

Chain Lh

Large ribosomal subunit protein eL33A