IL_8ZGY_050

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|U|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_050 not in the Motif Atlas

Homologous match to IL_8CRE_056

Geometric discrepancy: 0.1348

The information below is about IL_8CRE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|LA|G|1206
8ZGY|1|LA|U|1207
8ZGY|1|LA|G|1208
*
8ZGY|1|LA|C|1295
8ZGY|1|LA|C|1296

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LK

Large ribosomal subunit protein uL6A

Chain LL

Large ribosomal subunit protein uL16

Chain LU

Large ribosomal subunit protein eL20A

Chain Lo

Large ribosomal subunit protein eL40A