IL_8ZGY_058

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_058 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.07

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8ZGY|1|LA|G|1443
8ZGY|1|LA|U|1444
8ZGY|1|LA|A|1445
8ZGY|1|LA|G|1446
8ZGY|1|LA|U|1447
8ZGY|1|LA|A|1448
8ZGY|1|LA|G|1449
*
8ZGY|1|LA|C|2353
8ZGY|1|LA|G|2354
8ZGY|1|LA|A|2355
8ZGY|1|LA|A|2356
8ZGY|1|LA|A|2357
8ZGY|1|LA|C|2358

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain LR

Large ribosomal subunit protein uL22A