IL_8ZGY_065
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGC*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_065 not in the Motif Atlas
- Homologous match to IL_8CRE_073
- Geometric discrepancy: 0.0591
- The information below is about IL_8CRE_073
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8ZGY|1|LA|G|1660
8ZGY|1|LA|G|1661
8ZGY|1|LA|C|1662
*
8ZGY|1|LA|G|1785
8ZGY|1|LA|A|1786
8ZGY|1|LA|C|1787
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lr
- Large ribosomal subunit protein eL43A
Coloring options: