IL_8ZGY_068

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8ZGY|1|LA|G|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_068 not in the Motif Atlas

Homologous match to IL_8P9A_299

Geometric discrepancy: 0.0864

The information below is about IL_8P9A_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00981.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|U|1693
8ZGY|1|LA|U|1694
8ZGY|1|LA|A|1695
8ZGY|1|LA|A|1696
8ZGY|1|LA|C|1697
*
8ZGY|1|LA|G|1746
8ZGY|1|LA|G|1747
8ZGY|1|LA|A|1748
8ZGY|1|LA|A|1749
8ZGY|1|LA|G|1750
8ZGY|1|LA|A|1751

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Li

Large ribosomal subunit protein eL34A

Chain Lm

Large ribosomal subunit protein eL38