IL_8ZGY_076

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8ZGY|1|LA|U|1930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_076 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0724

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8ZGY|1|LA|C|1917
8ZGY|1|LA|G|1918
8ZGY|1|LA|U|1919
8ZGY|1|LA|A|1920
8ZGY|1|LA|A|1921
8ZGY|1|LA|C|1922
*
8ZGY|1|LA|G|1927
8ZGY|1|LA|G|1928
8ZGY|1|LA|A|1929
8ZGY|1|LA|U|1930
8ZGY|1|LA|A|1931
8ZGY|1|LA|A|1932
8ZGY|1|LA|G|1933

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA