IL_8ZGY_077

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_077 not in the Motif Atlas

Homologous match to IL_8CRE_085

Geometric discrepancy: 0.0871

The information below is about IL_8CRE_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGY|1|LA|G|1939
8ZGY|1|LA|C|1940
8ZGY|1|LA|U|1941
*
8ZGY|1|LA|A|2105
8ZGY|1|LA|A|2106
8ZGY|1|LA|C|2107

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SV

Small ribosomal subunit protein eS8A