IL_8ZGY_078

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_078 not in the Motif Atlas

Homologous match to IL_8P9A_309

Geometric discrepancy: 0.4767

The information below is about IL_8P9A_309

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73355.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|G|1946
8ZGY|1|LA|G|1947
*
8ZGY|1|LA|C|2097
8ZGY|1|LA|A|2098
8ZGY|1|LA|A|2099
8ZGY|1|LA|C|2100

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A