IL_8ZGY_081

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8ZGY|1|LA|U|2158, 8ZGY|1|LA|U|2174, 8ZGY|1|LA|C|2178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_081 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.0961

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|C|2155
8ZGY|1|LA|G|2156
8ZGY|1|LA|A|2157
8ZGY|1|LA|U|2158
8ZGY|1|LA|G|2159
8ZGY|1|LA|G|2160
*
8ZGY|1|LA|U|2172
8ZGY|1|LA|G|2173
8ZGY|1|LA|U|2174
8ZGY|1|LA|U|2175
8ZGY|1|LA|G|2176
8ZGY|1|LA|A|2177
8ZGY|1|LA|C|2178
8ZGY|1|LA|G|2179

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA