IL_8ZGY_083

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8ZGY|1|LA|A|2241, 8ZGY|1|LA|A|2242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_083 not in the Motif Atlas

Homologous match to IL_8CRE_090

Geometric discrepancy: 0.0815

The information below is about IL_8CRE_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8ZGY|1|LA|U|2199
8ZGY|1|LA|G|2200
*
8ZGY|1|LA|U|2240
8ZGY|1|LA|A|2241
8ZGY|1|LA|A|2242
8ZGY|1|LA|A|2243

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Tb

Transfer RNA; tRNA