IL_8ZGY_084

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

8ZGY|1|LA|U|2208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|C|2203
8ZGY|1|LA|U|2204
8ZGY|1|LA|G|2205
8ZGY|1|LA|A|2206
8ZGY|1|LA|A|2207
8ZGY|1|LA|U|2208
8ZGY|1|LA|G|2209
*
8ZGY|1|LA|C|2234
8ZGY|1|LA|G|2235
8ZGY|1|LA|C|2236
8ZGY|1|LA|G|2237

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SQ

Small ribosomal subunit protein eS1A

Chain Tb

Transfer RNA; tRNA