IL_8ZGY_089

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8ZGY|1|LA|A|2396, 8ZGY|1|LA|C|2982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_089 not in the Motif Atlas

Homologous match to IL_8CRE_097

Geometric discrepancy: 0.0661

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8ZGY|1|LA|G|2395
8ZGY|1|LA|A|2396
8ZGY|1|LA|A|2397
*
8ZGY|1|LA|U|2980
8ZGY|1|LA|A|2981
8ZGY|1|LA|C|2982
8ZGY|1|LA|C|2983

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A