IL_8ZGY_094
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8ZGY|1|LA|G|2521, 8ZGY|1|LA|G|2584, 8ZGY|1|LA|G|2585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_094 not in the Motif Atlas
- Homologous match to IL_8CRE_106
- Geometric discrepancy: 0.153
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8ZGY|1|LA|A|2519
8ZGY|1|LA|U|2520
8ZGY|1|LA|G|2521
8ZGY|1|LA|A|2522
8ZGY|1|LA|A|2523
8ZGY|1|LA|G|2524
8ZGY|1|LA|C|2525
*
8ZGY|1|LA|G|2583
8ZGY|1|LA|G|2584
8ZGY|1|LA|G|2585
8ZGY|1|LA|U|2586
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LZ
- Large ribosomal subunit protein uL23
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