IL_8ZGY_095

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|A|2625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_095 not in the Motif Atlas

Homologous match to IL_8P9A_325

Geometric discrepancy: 0.062

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8ZGY|1|LA|G|2613
8ZGY|1|LA|G|2614
*
8ZGY|1|LA|C|2624
8ZGY|1|LA|A|2625
8ZGY|1|LA|C|2626

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29

Chain Lq

Large ribosomal subunit protein eL42A