IL_8ZGY_102

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_102 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.162

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8ZGY|1|LA|G|2827
8ZGY|1|LA|U|2828
8ZGY|1|LA|G|2829
*
8ZGY|1|LA|U|2857
8ZGY|1|LA|U|2858
8ZGY|1|LA|U|2859
8ZGY|1|LA|U|2860
8ZGY|1|LA|U|2861

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LL

Large ribosomal subunit protein uL16