IL_8ZGY_103

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_103 not in the Motif Atlas

Homologous match to IL_8CRE_114

Geometric discrepancy: 0.0883

The information below is about IL_8CRE_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8ZGY|1|LA|U|2834
8ZGY|1|LA|C|2835
8ZGY|1|LA|A|2836
8ZGY|1|LA|A|2837
8ZGY|1|LA|G|2838
*
8ZGY|1|LA|C|2848
8ZGY|1|LA|G|2849
8ZGY|1|LA|A|2850
8ZGY|1|LA|C|2851
8ZGY|1|LA|A|2852

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Large ribosomal subunit protein eL40A