IL_8ZGY_106

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8ZGY|1|LA|A|2940, 8ZGY|1|LA|C|2941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_106 not in the Motif Atlas

Homologous match to IL_8P9A_336

Geometric discrepancy: 0.0731

The information below is about IL_8P9A_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8ZGY|1|LA|C|2880
8ZGY|1|LA|U|2881
*
8ZGY|1|LA|A|2939
8ZGY|1|LA|A|2940
8ZGY|1|LA|C|2941
8ZGY|1|LA|G|2942

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A