IL_8ZGY_111

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|A|2970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_111 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.292

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8ZGY|1|LA|C|2959
8ZGY|1|LA|G|2960
*
8ZGY|1|LA|C|2969
8ZGY|1|LA|A|2970
8ZGY|1|LA|G|2971

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LL

Large ribosomal subunit protein uL16