IL_8ZGY_115

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|C|3091, 8ZGY|1|LA|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_115 not in the Motif Atlas

Homologous match to IL_8P9A_345

Geometric discrepancy: 0.0934

The information below is about IL_8P9A_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8ZGY|1|LA|U|3046
8ZGY|1|LA|A|3047
8ZGY|1|LA|A|3048
8ZGY|1|LA|U|3049
8ZGY|1|LA|U|3050
*
8ZGY|1|LA|A|3090
8ZGY|1|LA|C|3091
8ZGY|1|LA|C|3092
8ZGY|1|LA|A|3093

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A

Chain LY

Large ribosomal subunit protein eL24A