IL_8ZGY_125

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|U|3258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_125 not in the Motif Atlas

Homologous match to IL_8CRE_133

Geometric discrepancy: 0.1072

The information below is about IL_8CRE_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82741.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8ZGY|1|LA|C|3224
8ZGY|1|LA|A|3225
8ZGY|1|LA|A|3226
8ZGY|1|LA|C|3227
8ZGY|1|LA|G|3228
*
8ZGY|1|LA|U|3257
8ZGY|1|LA|U|3258
8ZGY|1|LA|G|3259

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LO

Large ribosomal subunit protein eL14A

Chain LQ

Large ribosomal subunit protein uL13A