IL_8ZGY_131

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|G|3376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_131 not in the Motif Atlas

Homologous match to IL_8CRE_138

Geometric discrepancy: 0.0549

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|G|3327
8ZGY|1|LA|U|3328
8ZGY|1|LA|A|3329
*
8ZGY|1|LA|U|3372
8ZGY|1|LA|U|3373
8ZGY|1|LA|A|3374
8ZGY|1|LA|A|3375
8ZGY|1|LA|G|3376
8ZGY|1|LA|C|3377

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A