IL_8ZGY_140

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_140 not in the Motif Atlas

Homologous match to IL_8OI5_138

Geometric discrepancy: 0.1178

The information below is about IL_8OI5_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

8ZGY|1|LB|U|32
8ZGY|1|LB|U|33
8ZGY|1|LB|C|34
8ZGY|1|LB|C|35
8ZGY|1|LB|C|36
*
8ZGY|1|LB|G|41
8ZGY|1|LB|A|42
8ZGY|1|LB|U|43
8ZGY|1|LB|C|44
8ZGY|1|LB|A|45

Current chains

Chain LB

5S rRNA (121-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LG

Large ribosomal subunit protein uL18

Chain LM

Large ribosomal subunit protein uL5B