IL_8ZGY_145

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

8ZGY|1|S2|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_145 not in the Motif Atlas

Geometric match to IL_8F5G_002

Geometric discrepancy: 0.3096

The information below is about IL_8F5G_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8ZGY|1|S2|U|24
8ZGY|1|S2|C|25
8ZGY|1|S2|A|26
*
8ZGY|1|S2|U|600
8ZGY|1|S2|A|601

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A