IL_8ZGY_147

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8ZGY|1|S2|U|45, 8ZGY|1|S2|A|46, 8ZGY|1|S2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_147 not in the Motif Atlas

Geometric match to IL_8P9A_376

Geometric discrepancy: 0.2687

The information below is about IL_8P9A_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.1

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZGY|1|S2|G|42
8ZGY|1|S2|A|43
8ZGY|1|S2|U|44
8ZGY|1|S2|U|45
8ZGY|1|S2|A|46
8ZGY|1|S2|A|47
8ZGY|1|S2|G|48
*
8ZGY|1|S2|C|431
8ZGY|1|S2|G|432
8ZGY|1|S2|C|433

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A