3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUUAUUU*AUUCAA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|S2|U|116
8ZGY|1|S2|U|117
8ZGY|1|S2|U|118
8ZGY|1|S2|A|119
8ZGY|1|S2|U|120
8ZGY|1|S2|U|121
8ZGY|1|S2|U|122
*
8ZGY|1|S2|A|295
8ZGY|1|S2|U|296
8ZGY|1|S2|U|297
8ZGY|1|S2|C|298
8ZGY|1|S2|A|299
8ZGY|1|S2|A|300

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS
Small ribosomal subunit protein eS4A
Chain SV
Small ribosomal subunit protein eS8A
Chain SX
Small ribosomal subunit protein uS17A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.431 s
Application loaded.