IL_8ZGY_158

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_158 not in the Motif Atlas

Geometric match to IL_5J7L_273

Geometric discrepancy: 0.3356

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8ZGY|1|S2|A|206
8ZGY|1|S2|U|207
8ZGY|1|S2|U|208
*
8ZGY|1|S2|A|257
8ZGY|1|S2|C|258
8ZGY|1|S2|U|259

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A