IL_8ZGY_162

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8ZGY|1|S2|G|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|S2|U|318
8ZGY|1|S2|U|319
8ZGY|1|S2|U|320
8ZGY|1|S2|C|321
8ZGY|1|S2|G|322
8ZGY|1|S2|A|323
*
8ZGY|1|S2|U|345
8ZGY|1|S2|G|346

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A