IL_8ZGY_163

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8ZGY|1|S2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_163 not in the Motif Atlas

Geometric match to IL_8CRE_410

Geometric discrepancy: 0.1261

The information below is about IL_8CRE_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73789.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZGY|1|S2|G|363
8ZGY|1|S2|G|364
8ZGY|1|S2|G|365
*
8ZGY|1|S2|C|376
8ZGY|1|S2|G|377
8ZGY|1|S2|A|378
8ZGY|1|S2|U|379
8ZGY|1|S2|U|380
8ZGY|1|S2|C|381

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A