IL_8ZGY_170

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8ZGY|1|S2|G|539, 8ZGY|1|S2|G|540, 8ZGY|1|S2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|S2|G|514
8ZGY|1|S2|A|515
8ZGY|1|S2|G|516
*
8ZGY|1|S2|C|536
8ZGY|1|S2|G|537
8ZGY|1|S2|A|538
8ZGY|1|S2|G|539
8ZGY|1|S2|G|540
8ZGY|1|S2|A|541
8ZGY|1|S2|A|542
8ZGY|1|S2|C|543

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A