IL_8ZGY_174
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8ZGY|1|S2|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_174 not in the Motif Atlas
- Geometric match to IL_8CRE_424
- Geometric discrepancy: 0.1166
- The information below is about IL_8CRE_424
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|S2|G|616
8ZGY|1|S2|U|617
8ZGY|1|S2|U|618
8ZGY|1|S2|A|619
8ZGY|1|S2|A|620
8ZGY|1|S2|A|621
8ZGY|1|S2|A|622
*
8ZGY|1|S2|U|1104
8ZGY|1|S2|C|1105
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: