IL_8ZGY_184
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GA*UUU
- Length
- 5 nucleotides
- Bulged bases
- 8ZGY|1|S2|U|959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_184 not in the Motif Atlas
- Geometric match to IL_8P9A_372
- Geometric discrepancy: 0.2864
- The information below is about IL_8P9A_372
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
8ZGY|1|S2|G|868
8ZGY|1|S2|A|869
*
8ZGY|1|S2|U|958
8ZGY|1|S2|U|959
8ZGY|1|S2|U|960
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sf
- Small ribosomal subunit protein eS27A
Coloring options: