IL_8ZGY_193

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ZGY|1|S2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_193 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.2384

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|S2|G|1051
8ZGY|1|S2|U|1052
8ZGY|1|S2|G|1053
*
8ZGY|1|S2|C|1066
8ZGY|1|S2|C|1067

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SQ

Small ribosomal subunit protein eS1A

Chain Sf

Small ribosomal subunit protein eS27A