IL_8ZGY_204

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ZGY|1|S2|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_204 not in the Motif Atlas

Geometric match to IL_8P9A_437

Geometric discrepancy: 0.2424

The information below is about IL_8P9A_437

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|S2|G|1268
8ZGY|1|S2|U|1269
8ZGY|1|S2|G|1270
*
8ZGY|1|S2|C|1440
8ZGY|1|S2|C|1441

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31