IL_8ZGY_224

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8ZGY|1|S2|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_224 not in the Motif Atlas

Geometric match to IL_8P9A_458

Geometric discrepancy: 0.1862

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|S2|U|1656
8ZGY|1|S2|U|1657
8ZGY|1|S2|G|1658
*
8ZGY|1|S2|U|1743
8ZGY|1|S2|A|1744

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Large ribosomal subunit protein uL14A

Chain Lp

Large ribosomal subunit protein eL41A

Chain Sc

Small ribosomal subunit protein uS12A