IL_8ZGY_227
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_227 not in the Motif Atlas
- Geometric match to IL_8CRE_474
- Geometric discrepancy: 0.1477
- The information below is about IL_8CRE_474
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8ZGY|1|S2|U|1669
8ZGY|1|S2|G|1670
8ZGY|1|S2|A|1671
8ZGY|1|S2|G|1672
*
8ZGY|1|S2|C|1729
8ZGY|1|S2|A|1730
8ZGY|1|S2|A|1731
8ZGY|1|S2|A|1732
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
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