IL_8ZGY_230

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_230 not in the Motif Atlas

Geometric match to IL_8CRE_476

Geometric discrepancy: 0.1862

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8ZGY|1|S2|A|1678
8ZGY|1|S2|G|1679
8ZGY|1|S2|G|1680
8ZGY|1|S2|A|1681
8ZGY|1|S2|U|1682
*
8ZGY|1|S2|A|1719
8ZGY|1|S2|G|1720
8ZGY|1|S2|A|1721
8ZGY|1|S2|A|1722
8ZGY|1|S2|U|1723

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LY

Large ribosomal subunit protein eL24A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A