IL_8ZGY_233

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_233 not in the Motif Atlas

Geometric match to IL_8I3Z_001

Geometric discrepancy: 0.3971

The information below is about IL_8I3Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16386.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8ZGY|1|S2|G|1696
8ZGY|1|S2|G|1697
*
8ZGY|1|S2|U|1704
8ZGY|1|S2|C|1705
8ZGY|1|S2|C|1706

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains