IL_8ZH3_070

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_070 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.0825

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8ZH3|1|LA|U|1702
8ZH3|1|LA|U|1703
8ZH3|1|LA|A|1704
8ZH3|1|LA|U|1705
8ZH3|1|LA|C|1706
8ZH3|1|LA|A|1707
*
8ZH3|1|LA|U|1737
8ZH3|1|LA|C|1738
8ZH3|1|LA|U|1739
8ZH3|1|LA|U|1740
8ZH3|1|LA|A|1741
8ZH3|1|LA|U|1742
8ZH3|1|LA|G|1743

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Li

Large ribosomal subunit protein eL34A

Chain Lr

Large ribosomal subunit protein eL43A