IL_8ZH3_088
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8ZH3|1|LA|A|2281, 8ZH3|1|LA|C|2287, 8ZH3|1|LA|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_088 not in the Motif Atlas
- Homologous match to IL_8CRE_095
- Geometric discrepancy: 0.0705
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|LA|C|2277
8ZH3|1|LA|C|2278
8ZH3|1|LA|A|2279
8ZH3|1|LA|A|2280
8ZH3|1|LA|A|2281
8ZH3|1|LA|U|2282
8ZH3|1|LA|G|2283
8ZH3|1|LA|C|2284
8ZH3|1|LA|C|2285
8ZH3|1|LA|U|2286
8ZH3|1|LA|C|2287
8ZH3|1|LA|G|2288
*
8ZH3|1|LA|C|2304
8ZH3|1|LA|G|2305
8ZH3|1|LA|C|2306
8ZH3|1|LA|G|2307
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: