IL_8ZH3_092

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8ZH3|1|LA|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_092 not in the Motif Atlas

Homologous match to IL_8CRE_099

Geometric discrepancy: 0.0814

The information below is about IL_8CRE_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8ZH3|1|LA|G|2412
8ZH3|1|LA|A|2413
*
8ZH3|1|LA|U|2807
8ZH3|1|LA|A|2808
8ZH3|1|LA|C|2809
8ZH3|1|LA|C|2810

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Ta

Transfer RNA; tRNA