IL_8ZH3_142
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8ZH3|1|LC|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_142 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.0936
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_76400.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8ZH3|1|LC|U|64
8ZH3|1|LC|A|65
8ZH3|1|LC|A|66
*
8ZH3|1|LC|U|93
8ZH3|1|LC|C|94
8ZH3|1|LC|G|95
8ZH3|1|LC|A|96
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ll
- Large ribosomal subunit protein eL37A
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