IL_8ZH3_157

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8ZH3|1|S2|U|260, 8ZH3|1|S2|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_157 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2631

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8ZH3|1|S2|G|204
8ZH3|1|S2|U|205
8ZH3|1|S2|A|206
*
8ZH3|1|S2|U|259
8ZH3|1|S2|U|260
8ZH3|1|S2|U|261
8ZH3|1|S2|U|262
8ZH3|1|S2|C|263

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SV

Small ribosomal subunit protein eS8A