IL_8ZH3_201
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8ZH3|1|S2|C|1158, 8ZH3|1|S2|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_201 not in the Motif Atlas
- Geometric match to IL_8CRE_445
- Geometric discrepancy: 0.0974
- The information below is about IL_8CRE_445
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8ZH3|1|S2|A|1157
8ZH3|1|S2|C|1158
8ZH3|1|S2|C|1159
8ZH3|1|S2|A|1160
*
8ZH3|1|S2|U|1617
8ZH3|1|S2|C|1618
8ZH3|1|S2|C|1619
8ZH3|1|S2|C|1620
8ZH3|1|S2|U|1621
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SL
- Small ribosomal subunit protein eS28A
- Chain Tb
- Transfer RNA; tRNA
- Chain mR
- RNA (5'-R(P*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
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